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Parameters in GUI
Parameter | Description | Default value |
---|---|---|
Output file | File to store a report. | |
Annotation name | Annotation name used to compare genes and reference genomes.. | blast-result |
Existing file | If a target report already exists you should specify how to handle that. Merge two table in one. Overwrite or Rename existing file.. | Merge |
Identity cutoff | Identity between gene sequence length and annotation length in per cent. BLAST identity (if specified) is checked after | 90.0000% |
Parameters in
Schema FileWorkflow File
Type: genebygene-report-id
Parameter | Parameter in the GUI | Type |
---|---|---|
output-file | Output file | string |
annotation_name | Annotation name | string |
existing | Existing file | string |
identity | Identity cutoff | numeric |
Input/Output Ports
The element has 1 input port:
Name in GUI: Gene by gene report data
Name in Schema File Workflow File: in-data
Slots:
Slot In GUI | Slot in Schema Workflow File | Type |
---|---|---|
Input annotations | gene-ann | ann-table-list |
Input sequences | gene-seq | seq |