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Workflow Designer. UGENE Workflow Designer is a central part of UGENE  that allows a molecular biologist to create and run complex computational workflows even if he or she is not familiar with any programming language. 

 The workflows comprise A workflow comprises reproducible, reusable and self-documented research routinesroutine, with a simple and unambiguous visual representation suitable for publications.   The workflows A workflow can be run both locally and remotely, either using graphical interface or launched from the command line.   The elements that a workflow consists of corresponds to the bulk of  Elements in workflow correspond algorithms integrated into UGENE. Additionally you can create custom workflow elements using integrated scripting language, or by connecting arbitrary external command line utility

 To launch the Workflow Designer select the Tools ‣ Workflow Designer item in the UGENE main menu. The following window appears: