Nucleotide or protein sequences (Sequence View). If you open a sequence, for example The Sequence View is one of the major object views in UGENE aimed to visualize and edit DNA, RNA or protein sequences along with their properties like annotations, chromatograms, 3D models, statistical data, etc. For each file UGENE analyzes the file content and automatically opens the most appropriate view. To activate the Sequence View open any file with at least one sequence. For example you can use the $ugene/data/samples/Genbank/murine.gb, gb file provided with UGENE. After opening the file in UGENE the Sequence View appears. The following views are available: the project view with your documents, the sequence view with your sequence and its annotations, options panel with additional info and algorithms: window appears:
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<center> <img src="/wiki/download/attachments/2883698/sequence_view.gif"/> </center> |
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Notifications - shows notifications for task reports.You can also use algorithms and instruments
After the view is opened you can see a set of new buttons in the toolbar area. The actions provided by these buttons are available for all sequences opened in the view. These actions also available from the context menu
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. Many instruments and algorithms are available:
- Find pattern
- Find ORFs
- Find annotated regions
- Build dotplot
- Find repeats
- Find tandems
- Find restriction sites
- Primer 3
- Find high DNA flexibility regions
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