Translates a sequence into it’s amino translation or translations.
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Element type: sequence-translation
Parameters
| Parameter | Description | Default value | Parameter in Workflow File | Type |
|---|---|---|---|---|
| Translate from | Specifies position that should be used to translate the sequence from: first, second, third or all (three output amino sequences would be generated). | all | pos-2-translate | string Available values are:
|
| Auto selected genetic code | Specifies that genetic code should be selected automatically. | True | auto-translation | boolean |
| Genetic code | Genetic code that should be used to translate the input nucleotide sequence. | The Standard Genetic Code |
Parameters in Workflow File
Type: sequence-translation
string
Available values are:
- all
- first
- second
- third
| genetic |
| - |
| code | string |
Input/Output Ports
The element has 1 input port:
Name in GUI: Input Data
Name in Workflow File: in-sequence
Slots:
| Slot In GUI | Slot in Workflow File | Type |
|---|---|---|
| Sequence | sequence | sequence |
And 1 output port:
Name in GUI: Amino sequence
Name in Workflow File: out-sequence
Slots:
| Slot In GUI | Slot in Workflow File | Type |
|---|---|---|
| Sequence | sequence | sequence |
| Plain text | text | string |