Parses annotations to find any IDs and fetches corresponding sequences.
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Element type: fetch-sequence
Parameters
| Parameter | Description | Default value | Parameter in Workflow File | Type |
|---|---|---|---|---|
| Save file to directory | The directory to store sequence files loaded from a database. | default | save-dir | string |
| NCBI database | The database to read from. | nucleotide Available values are:
|
Parameters in Workflow File
Type: fetch-sequence
| database | string |
Input/Output Ports
The element has 1 input port:
Name in GUI: Input annotations
Name in Workflow File: in-annotations
Slots:
| Slot In GUI | Slot in Workflow File | Type |
|---|---|---|
| Set of annotations | annotations | annotation-table |
And 1 output port:
Name in GUI: Sequence
Name in Workflow File: out-sequence
Slots:
| Slot In GUI | Slot in Workflow File | Type |
|---|---|---|
| Set of annotations | annotations | annotation-table |
| Sequence | sequence | sequence |