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If a whole sequence has quality less than the threshold or the length of the output sequence less than the minimum length threshold then the sequence is skipped.
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Elemet type: SequenceQualityTrim
Parameters
| Parameter | Description | Default value | Parameter in Workflow File | Type |
|---|---|---|---|---|
| Trimming quality threshold | Quality threshold for trimming. | 30 | qual-id | numeric |
| Min length | Too short reads are discarded by the filter. | 0 | len-id | numeric |
| Trim both ends | Trim both ends of a read or not. Usually, you need to set True for Sanger sequencing and False for NGS | True |
qual-id
numeric
len-id
numeric
Type: SequenceQualityTrim
| both- |
| ends | boolean |
Input/Output Ports
The element has 1 input port.
Name in GUI: Input data
Name in Workflow File: in-sequence
Slots:
| Slot In GUI | Slot in Workflow File | Type |
|---|---|---|
| Sequence | sequence | sequence |
And 1 output port:
Name in GUI: Output data
Name in Workflow File: out-sequence
Slots:
| Slot In GUI | Slot in Workflow File | Type |
|---|---|---|
| Sequence | sequence | sequence |