Convert bedGraph files to bigWig.
Parameters in GUIElement type: bgtbw-bam
Parameters
| Parameter | Description | Default value | Parameter in Workflow File | Type |
|---|---|---|---|---|
| Output directory | Select an output directory. Custom - specify the output directory in the 'Custom directory' parameter. Workflow - internal workflow directory. Input file - the directory of the input file. | Input file | out-mode | numeric |
| Custom directory | Specify the output directory. |
| custom-dir | string | |||
| Genome | File with genome length. | human.hg18 | genome | string |
| Output name | A name of an output file. If default of empty value is provided the output name is the name of the first file with additional extention. | out-name |
| string | ||||
| Block size | Number of items to bundle in r-tree (-blockSize). | 256 | bs | numeric |
| Items per slot | Number of data points bundled at lowest level (-itemsPerSlot). | 1024 | its | numeric |
| Uncompressed | If set, do not use compression.(-unc). | False |
Parameters in Workflow File
...
...
| unc |
...
| boolean |
...
Input/Output Ports
The element has 1 input port:
Name in GUI: BedGrapgh files
Name in Workflow File: in-file
Slots:
| Slot In GUI | Slot in Workflow File | Type |
|---|---|---|
| Source URL | url | string |
And 1 output port:
Name in GUI: BigWig files
Name in Workflow File: out-file
Slots:
| Slot In GUI | Slot in Workflow File | Type |
|---|---|---|
| Source URL | url | string |