Align input sequences (e.g. Sanger reads) to the reference sequence.
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Element type: align-to-reference
Parameters
| Parameter | Description | Default value | Parameter in Workflow File | Type |
|---|---|---|---|---|
| Reference URL | A URL to the file with a reference sequence. |
Parameters in Workflow File
Type: align-to-reference
| reference |
| string |
Input/Output Ports
The element has 1 input port:
Name in GUI: Input sequence
Name in Workflow File: in-sequence
Slots:
| Slot In GUI | Slot in Workflow File | Type |
|---|---|---|
| Sequence | sequence | sequence |
And 1 output port:
Name in GUI: Aligned data
Name in Workflow File: out
Slots:
| Slot In GUI | Slot in Workflow File | Type |
|---|---|---|
| Set of annotations | annotations | ann_table |
| MSA | msa | malignment |
| Sequence | sequence | sequence |