Plots the PhastCons scores score profiles.
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Element type: conservation_plot-id
Parameters
| Parameter | Description | Default value | Parameter in Workflow File | Type |
|---|---|---|---|---|
| Output file | File to store phastcons results (BMP). |
string
| output-file | string | |||
| Title | Title of the figure (--title). | Average Phastcons around the Center of Sites | title | string |
| Label | Label of data in the figure (--bed-label). | Conservation_at_peak_summits | label | string |
| Assembly version | The directory to store phastcons scores (--phasdb). | hg19 | assembly_version | string |
| Window width | Window width centered at middle of regions (-w). | 1000 | windos_s | numeric |
| Height | Height of plot (--height). | 1000 | height | numeric |
| Width | Width of plot (--width). | 1000 |
Parameters in Workflow File
Type: conservation_plot-id
| width |
| numeric |
Input/Output Ports
The element has 1 input port:
Name in GUI: conservation_plot data
Name in Workflow File: in-data
Slots:
| Slot In GUI | Slot in Workflow File | Type |
|---|---|---|
| Input regions | cp_treat-ann | ann-table-list |