WEVOTE (WEighted VOting Taxonomic idEntification) is a metagenome shortgun sequencing DNA reads classifier based on an ensemble of other classification methods (Kraken, CLARK, etc.).
Parameters in GUI
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Element type: wevote-classify
Parameters
| Parameter | Description | Defaultvalue | Parameter in Workflow File | Type |
|---|---|---|---|---|
| Penalty | Score penalty for disagreements (-k) | 2 | penalty | number |
| Number of agreed tools | Specify the minimum number of tools agreed on WEVOTE decision (-a). | 0 |
Parameter
Parameter in the GUI
Type
penalty
Penalty
number
number-of-agreed-tools
Number of agreed tools
number
score-threshold
Score threshold
number
threads
Number of threads
number
number-of-agreed-tools | number | |||
| Score threshold | Score threshold (-s) | 0 | score-threshold | number |
| Number of threads | Use multiple threads (-n). | 8 | threads | number |
| Output file | Specify the output text file name. | auto |
Parameters in Workflow File
Type: wevote-classify
output-url |
string |
Input/Output Ports
The element has 1 input port:
Name in GUI: Input classification CSV file:
Input a CSV file in the following format: 1) a sequence name 2) taxID from the first tool 3) taxID from the second tool 4) etc.
Name in Workflow File: in
Slots:
| SlotInGUI | Slot in Workflow File | Type |
|---|---|---|
| Input URL | url | string |
The element has 1 output port:
Name in GUI: WEVOTE Classification:
A map of sequence names with the associated taxonomy IDs.
Name in Workflow File: out
Slots:
| SlotInGUI | Slot in Workflow File | Type |
|---|---|---|
Taxonomy classification data | tax-data | tax-classification |