Apply VCF variants to a fasta file to create a consensus sequence.
Element type: vcf-consensus
Parameters
in GUI| Parameter | Description | Default value | Parameter in Workflow File | Type |
|---|---|---|---|---|
| Output FASTA consensus | The URL to the output file with the resulting consensus. |
Parameters in Workflow File
Type: vcf-consensus
| consensus-url |
| string |
Input/Output Ports
The element has 1 input ports:
Name in GUI: Input FASTA and VCF
Name in Workflow File: in-data
Slots:
| Slot In GUI | Slot in Workflow File | Type |
|---|---|---|
| Fasta url | fasta | string |
| VCF url | vcf | string |
And 1 output port:
Name in GUI: Fasta consensus URL
Name in Workflow File: out-consensus
Slots:
| Slot In GUI | Slot in Workflow File | Type |
|---|---|---|
| out-consensus | out-consensus | string |