Workflow Designer Documentation v. 1.14.0
Child pages
  • RNA-seq Analysis with Tuxedo Tools

Versions Compared

Old Version 8

changes.mady.by.user Yuliya Algaer

Saved on

compared with

New Version 9

changes.mady.by.user Yuliya Algaer

Saved on

Key

  • This line was added.
  • This line was removed.
  • Formatting was changed.

...

HTML
<center>
  <br>
  <img src="/wiki/download/attachments/3244623/RNA-seq analysis with Tuxedo tools_1.png"/>
  <br> 
</center>

Here you need to choose analysis type and short reads type and click Setup. There are two short reads type: single-end and paired-end reads. For both of them there are three analysis type:

...

HTML
<center>
  <br>
  <img src="/wiki/download/attachments/3244623/RNA-seq analysis with Tuxedo tools_21.png"/>
  <br> 
</center>

For Full Tuxedo Pipeline analysis type and paired-end reads type the following workflow appears:

HTML
<center>
  <br>
  <img src="/wiki/download/attachments/3244623/RNA-seq analysis with Tuxedo tools_32.png"/>
  <br> 
</center>

For Single-sample Tuxedo Pipeline analysis type and single-end reads type the following workflow appears:

HTML
<center>
  <br>
  <img src="/wiki/download/attachments/3244623/RNA-seq analysis with Tuxedo tools_43.png"/>
  <br> 
</center>

For Single-sample Tuxedo Pipeline analysis type and paired-end reads type the following workflow appears:

HTML
<center>
  <br>
  <img src="/wiki/download/attachments/3244623/RNA-seq analysis with Tuxedo tools_54.png"/>
  <br> 
</center>

For No-new-transcripts Tuxedo Pipeline analysis type and single-end reads type the following workflow appears:

...