The Circular Viewer plugin provides capability to show the circular view of a nucleotide sequence.
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Open a nucleotide sequence object in the Sequence View. The Show circular view button is available on the sequence toolbar:
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<center>
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<img src="/wiki/download/attachments/4227374/Circular Viewer_1.png"/>
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The Circular Viewer is opened automatically when the Sequence View is opened for a plasmid. |
The inner circle represents the sequence clockwise and the scale marks show the corresponding sequence positions. The sequence annotations are represented as curved colored regions at the outer side of the circle.
The Circular Viewer helps to navigate within the sequence. You can select an annotation on the circular view and the annotation will also be focused and highlighted in all Sequence View areas: Sequence overview, Sequence zoom view, Sequence details view and Annotations editor.
You can also select a sequence region:
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This will also affect the Sequence View.
Note that the circular view is zoomed automatically when the Circular Viewer area is resized:
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<center>
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<img src="/wiki/download/attachments/4227374/Circular Viewer_3.png"/>
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</center> |
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Note, that if a sequence file contains several sequences it is possible to view the circular views of the sequences in the same Circular Viewer area.
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<center>
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<img src="/wiki/download/attachments/4227374/Circular Viewer_5.png"/>
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</center> |
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