Merge BAM files using SAMTools merge.
Parameters in GUI
| Parameter | Description | Default value |
|---|---|---|
| Output directory | Select an output directory. Custom - specify the output directory in the 'Custom directory' parameter. Workflow - internal workflow directory. Input file - the directory of the input file. | |
| Custom directory | Custom output directory. | |
| Output BAM name | A name of an output BAM file. If default of empty value is provided the output name is the name of the first BAM file with .merged.bam extention. |
Parameters in Workflow File
Type: merge-bam
| Parameter | Parameter in the GUI | Type |
|---|---|---|
| out-mode | Output directory | numeric |
| custom-dir | Custom directory | string |
| out-name | Output name | string |
Input/Output Ports
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