The HMM2 plugin is a toolkit based on the Sean Eddy’s HMMER2 package.
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- Make the HMMER2 tools accessible to a wider user audience by providing a graphical interface for all supported utilities for most of the platforms.
- Be compatible with the original HMMER2 package.
- Create the a high-performance solution utilizing modern multi-core processors and SIMD instructions.
The current version of UGENE provides the user interface for three HMM2 tools: HMM build, HMM calibrate, and HMM search.
In the original program, the corresponding commands are: “hmmbuild”, “hmmcalibrate” and “hmmsearch”.
To access these tools select the Tools ‣ HMMER2 HMMER tools submenu of the program main menu:
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