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  1. The FastTree method. Check FastTree Web Site for more details.
  2. The IQ-TREE method. Check IQ-TREE Web Site for more details.
  3. The PHYLIP Neighbour-Joining method. The PHYLIP package implementation of the method is used under the hood.
  4. The MrBayes external tool. Check MrBayes Web Site for more details.
  5. PhyML Maximum Likelihood method. Check PhyML Maximum Likelihood Web Site for more details.