High Throughput Sequence QC Report by FastQC: On this page you must input FASTQ file(s) and optionally modify advanced parameters.
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The following parameters are available:
FASTQ URL(s) Semicolon-separated list of pathes to the input files. Output directory Select an output directory. Custom - specify the output directory in the 'Custom directory' parameter. Workflow - internal workflow directory. Input file - the directory of the input file. Custom directory Select the custom output directory.
List of adapters
Specifies a non-default file which contains the list of adapter sequences which will be explicity searched against the library. The file must contain sets of named adapters in the form name[tab]sequence. Lines prefixed with a hash will be ignored.
List of contaminants
Specifies a non-default file which contains the list of contaminants to screen overrepresented sequences against. The file must contain sets of named contaminants in the form name[tab]sequence. Lines prefixed with a hash will be ignored.