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Query Designer Documentation

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Created by Yuliya Algaer, last modified on Feb 28, 2014

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About the Query Designer
Introduction
Launching the Query Designer
Terminology
Query Designer Window Components
Schema Elements
How to Create and Run Schema
Manipulating Element
Adding Algorithm Element
Adding Constraint Element
Renaming Algorithm Element
Resizing and Moving Algorithm Element
Managing of Elements Parameters
Changing Algorithm Element Appearance
Deleting Element
Manipulating Schema
Creating New Schema
Loading Schema
Saving Schema
Changing Schema Appearance
Setting Order of Algorithms Execution
Managing Strands
Element Direction in Schema
Querying Sequence Strands
Running Schema from the Query Designer
Running Schema from the Sequence View
Query Designer Schema File Format
Header
Body
Element Description
Algorithm Element Description
Constraint Element Description
Metainformation
Query Elements
Algorithm Elements
CDD Algorithm Element
Base Content Algorithm Element
Gc Content Algorithm Element
HMM3 Algorithm Element
ORF Algorithm Element
Primer Algorithm Element
Repeats Algorithm Element
Restriction Sites Algorithm Element
Pattern Algorithm Element
SITECON Algorithm Element
Smith-Waterman Algorithm Element
Tandem Repeats Algorithm Element
Weight Matrix Algorithm Element
HMM2 Algorithm Element
Constraint Elements
End-Start Constraint Element
Start-End Constraint Element
End-End Constraint Element
Start-Start Constraint Element

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