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The element gets message(s) with alignment data and saves the data to the specified file(s) in one of the multiple sequence alignment formats, supported by UGENE (ClustalW, FASTA, etc.).

Element type: write-msa

Parameters


ParameterDescriptionDefault valueParameter in Workflow FileType
Data storagePlace to store workflow results: local file system or a database.
data-storagestring
Document formatFormat of the output file.clustaldocument-format

string

Available values are:

  • clustal
  • mega
  • msf
  • sam
  • srfasta
  • stockholm
Output file Location of the output data file. If this parameter is set, then the “Location” slot is not taken into account.
url-outstring
Output file suffixThis suffix will be used for generating the output file name.
url-suffixstring
Existing fileIf a target file already exists, you can specify how it should be handled: either overwritten, renamed or appended (if supported by file format).Renamewrite-mode

numeric

Available values are:

  • 0 - for overwrite
  • 1 - for append
  • 2 - for rename



Input/Output Ports

The element has 1 input port:

Name in GUI: Multiple sequence alignment

Name in Workflow File: in-msa

Slots:

Slot In GUISlot in Workflow FileType
MSAmsamsa
Locationurlstring
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