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Apply VCF variants to a fasta file to create a consensus sequence.

Element type: vcf-consensus

Parameters

ParameterDescriptionDefault valueParameter in Workflow FileType
Output FASTA consensusThe URL to the output file with the resulting consensus.
consensus-urlstring

Input/Output Ports

The element has 1 input ports:

Name in GUI: Input FASTA and VCF

Name in Workflow File: in-data

Slots:

Slot In GUISlot in Workflow FileType
Fasta urlfastastring
VCF urlvcfstring


And 1 
output port:

Name in GUI: Fasta consensus URL

Name in Workflow File: out-consensus

Slots:

Slot In GUISlot in Workflow FileType
out-consensusout-consensusstring



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