Task Name: convert-msa

Converts a multiple sequence alignment file from one format to another.

Parameters:

in — input multiple sequence alignment file. [String, Required]

out — name of the output file. [String, Required]

format — format of the output file. [String, Optional]

The following values are available:

• • clustal (default)
  • fasta
  • mega
  • msf
  • nexus
  • phylip-interleaved
  • phylip-sequential
  • stockholm

Example:

ugene convert-msa --in=CBS.sto --out=CBS --format=msf