Each element used in the schema must be described inside the body.An element description consists of the element name and a set of parameters enclosed in curly braces. A parameter and the value are separated by ‘:’, different parameters are separated by ‘;’:
element_name { parameter1:value1; parameter2:value2; ... } |
See, for example, a description of the Read alignment element:
read-msa { type:read-msa; name:"Read alignment"; url-in:/home/user/pkinase.sto; } |
Note, that the values of the parameters for an element can also be presented in the iterations block.For all elements the following parameters are defined:
For custom elements there is special parameter:
dump-info { type:"Script-Dump sequence info" name:"Dump sequence info" script { out_text=getName(in_sequence) + ": " + size(in_sequence); } } |
The list of parameters available depend on an element. Refer to the Workflow Elements chapter to find out the parameters for a particular element.To set a script value for a parameter use the following form:
parameter_name { a script value }; |