The element ensembles data, produced by classification tools (Kraken, CLARK, DIAMOND), into a single file in CSV format. This file can be used as input for the WEVOTE classifier.

Parameters in GUI

 

ParameterDescriptionDefaultvalue
Number of tools

Specify the number of classification tools. The corresponding data should be provided using the input ports.

2
Output file

Specify the output file. The classification data are stored in CSV format with the following columns:

  1. a sequence name
  2. taxID from the first tool
  3. taxID from the second tool
  4. optionally, taxID from the third tool

ensemble.cvs

Parameters in Workflow File

Type: ensemble-classification

Parameter

Parameter in the GUI

Type

number-tools

Number of tools

string

out-file

Output file

string

Input/Output Ports

The element has 3 identical input ports:

Name in GUI: Input taxonomy data

An input slot for taxonomy classification data.

Name in Workflow File: tax-data1, tax-data2, tax-data3

Slots:

SlotInGUISlot in Workflow FileType
Input tax data 1tax-data

tax-classification

Input tax data 2tax-data

tax-classification 

Input tax data 3tax-data

tax-classification 

The element has 1 output port:

Name in GUI: Ensembled classification 

URL to the CSV file with ensembled classification data.

Name in Workflow File: out

Slots:

SlotInGUISlot in Workflow FileType
Output URL

url

string