The workflow sample, described below, uses input assemblies to extract the consensus and save them to a FASTA.
If you haven't used the workflow samples in UGENE before, look at the "How to Use Sample Workflows" section of the documentation. |
The workflow sample "Extract Consensus from Assembly" can be found in the "NGS" section of the Workflow Designer samples.
The opened workflow looks as follows:
<center> <br> <img src="/wiki/download/attachments/13008921/Extract Consensus from Assembly.png"/> <br> </center> |
The wizard has 1 page.
Extract Consensus Page: On this page you must input assembly file and output file. Also you can modify other input parameters.
<center> <br> <img src="/wiki/download/attachments/13008921/Extract Consensus from Assembly_1.png"/> <br> </center> |
The following parameters are available:
Assembly | Semicolon-separated list of pathes to the input files. |
Algorithm | The algorithm of consensus extracting. |
Keep gaps | Set this parameter if the result consensus must keep the gaps. |
Output files | Location of output data file. If this attribute is set, slot "Location" in port will not be used. |