Assembling, browsing and analyzing of short reads assemblies

3. SAM/BAM files (Assembly Browser). If you open a file with a short reads assembly, like BAM or SAM files you see the following picture:

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  <img src="/wiki/download/attachments/2523429/pic13.png"/>
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Example 3: Highlighting the strand of reads. You can do this using the context menu or the Options Panel.

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  <img src="/wiki/download/attachments/2523429/pic14 (3).png"/>
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3D structure viewer

Building and visualizing of phylogenetic trees

Running dozens of algorithms for analyzing

Importing and exporting data into different bio-formats

Combining algorithms into custom workflows with UGENE Workflow Designer