The element gets message(s) with variations data and saves the data to the specified file(s) in one of the appropriate formats (e.g. VCF).

Element type: write-variations


ParameterDescriptionDefault valueParameter in Workflow FileType
Data storagePlace to store workflow results: local file system or a database.
Accumulate objectsAccumulate all incoming data in one file or create separate files for each input.In the latter case, an incremental numerical suffix is added to the file name.Trueaccumulateboolean
Document formatDocument format of output file.snpdocument-formatstring
Output fileLocation of output data file. If this attribute is set, slot "Location" in port will not be used.
Output file suffixThis suffix will be used for generating the output file name.
Existing fileIf a target file already exists, you can specify how it should be handled: either overwritten, renamed or appended (if supported by file format). If Rename option is chosen existing file will be renamed.Renamewrite-modenumeric

Input/Output Ports

The element has 1 input port:

Name in GUI: Variation track

Name in Workflow File: in-variations


Slot In GUISlot in Workflow FileType
Variation trackvariation-trackvariation