Align input sequences (e.g. Sanger reads) to the reference sequence.

Element type: align-to-reference

Parameters

ParameterDescriptionDefault valueParameter in Workflow FileType
Reference URLA URL to the file with a reference sequence.
referencestring

Input/Output Ports

The element has 1 input port:

Name in GUI: Input sequence

Name in Workflow File: in-sequence

Slots:

Slot In GUISlot in Workflow FileType
Sequencesequence

sequence

And 1 output port:

Name in GUI: Aligned data

Name in Workflow File: out

Slots:

Slot In GUISlot in Workflow FileType
Set of annotationsannotationsann_table
MSAmsamalignment
Sequencesequencesequence