This schema allows to analyze sequence with Query and save results as alignment of selected features.
If you haven't used the workflow samples in UGENE before, look at the "How to Use Sample Workflows" section of the documentation.
The workflow sample "Convert UQL Schema Results to Alignment" can be found in the "Conversions" section of the Workflow Designer samples.
The workflow looks as follows:
<center> <br> <img src="/wiki/download/attachments/16122706/Convert UQL Schema Results to Alignment.png"/> <br> </center>
The wizard has 2 pages.
Input sequence(s): On this page you must input sequence(s).
<center> <br> <img src="/wiki/download/attachments/16122706/Convert UQL Schema Results to Alignment_1.png"/> <br> </center>
Annotate with UQL: On this page you can modify annotation and output settings.
<center> <br> <img src="/wiki/download/attachments/16122706/Convert UQL Schema Results to Alignment_2.png"/> <br> </center>
The following parameters are available:
|UQL schema file||Schema file.|
|Merge||Merges regions of each result into single annotation if true.|
|Offset||Specifies left and right offsets for merged annotation (if 'Merge' parameter is set to true).|
|Annotation names||File with annotation names, separated with whitespaces or list of annotation names which will be accepted or filtered. Use space as the separator.|
|Accept or filter||Selects the name filter: accept specified names or accept all except specified.|
|Result file||Location of output data file. If this attribute is set, slot "Location" in port will not be used.|
|Document format||Document format of output file.|