As the Example1 above shows, both sequence strands are queried by default.

To modify this behavior select the Actions ‣ Query Sequence Mode item in the main menu or Query Sequence Mode toolbar button. You can choose between the following values:


Create the following schema:

  1. The Smith-Waterman algorithm element with AAG patern and the Forward direction.
  2. The Smith-Waterman element with CGG pattern and the Forward direction.
  3. Add a constraint to these elements.
  4. Set the Query Sequence Mode to Direct strand.
  5. Run the schema for a sequence.

Only the following results will be found:

     <img src="/wiki/download/attachments/4686242/Querying Sequence Strands.png"/>