Translates a sequence into its amino translation or translations.

Element type: sequence-translation

Parameters

ParameterDescriptionDefault valueParameter in Workflow FileType
Translate fromSpecifies position that should be used to translate the sequence from: first, second, third or all (three output amino sequences would be generated).allpos-2-translate

string

Available values are:

  • all
  • first
  • second
  • third
Auto selected genetic codeSpecifies that genetic code should be selected automatically.Trueauto-translationboolean
Genetic codeGenetic code that should be used to translate the input nucleotide sequence.The Standard Genetic Codegenetic-codestring


Input/Output Ports

The element has 1 input port:

Name in GUI: Input Data

Name in Workflow File: in-sequence

Slots:

Slot In GUISlot in Workflow FileType
Sequencesequencesequence

And 1 output port:

Name in GUI: Amino sequence

Name in Workflow File: out-sequence

Slots:

Slot In GUISlot in Workflow FileType
Sequencesequencesequence
Plain texttextstring