The element searches the input sequence for transcription factor binding sites (TFBSs) significantly similar to the specified weight matrix.

Parameters in GUI

ParameterDescriptionDefault value
Annotate AsName of the result annotations.misc_feature
DirectionSee the description here.Any
MatrixPath to the profile.You must specify a value!
Min scoreMinimum score to detect TFBS.85%


Parameters in Schema File

Type: wsearch

ParameterParameter in the GUIType
keyAnnotate Asstring
min-scoreMin scorenumeric


Available values are:

  • complement
  • direct
  • both