Write Annotations Element

The element gets message(s) with annotations data and saves the data to the specified file(s) in one of the appropriate formats (GenBank, GTF, etc.).

Parameters in GUI

Parameter	Description	Default value
Data storage	Place to store workflow results: local file system or a database.
Output file	Location of the output data file. If this attribute is set, slot “Location” in port will not be used.
Output file suffix	This suffix will be used for generating the output file name.
Existing file	If a target file already exists, you can specify how it should be handled: either overwritten, renamed or appended (if supported by file format).	Rename
Document format	Document format of output file.	genbank
Annotations name	Object name of the annotations.	unknown feature
CSV separator	String which separates values in CSV file(s).	”,” (comma)
Write sequence name	Write sequence to CSV file(s).	False

Parameters in Workflow File

Type: write-annotations

Parameter	Parameter in the GUI	Type
data-storage	Data storage	string
url-out	Output file	string
url-suffix	Output file suffix	string
write-mode	Existing file	numeric Available values are: 0 - for overwrite 1 - for append 2 - for rename
document-format	Document format	string Available values are: CSV GenBank GFF
annotations-name	Annotations name	string
separator	CSV separator	string
write_names	Write sequence name	boolean

Input/Output Ports

The element has 1 input port:

Name in GUI: Input annotations

Name in Workflow File: in-annotations

Slots: