The element gets message(s) with alignment data and saves the data to the specified file(s) in one of the multiple sequence alignment formats, supported by UGENE (ClustalW, FASTA, etc.).
Parameters in GUI
| Parameter | Description | Default value |
|---|---|---|
| Data storage | Place to store workflow results: local file system or a database. | |
| Document format | Format of the output file. | clustal |
| Output file | Location of the output data file. If this parameter is set, then the “Location” slot is not taken into account. | |
| Output file suffix | This suffix will be used for generating the output file name. | |
| Existing file | If a target file already exists, you can specify how it should be handled: either overwritten, renamed or appended (if supported by file format). | Rename |
Parameters in Workflow File
Type: write-msa
| Parameter | Parameter in the GUI | Type |
|---|---|---|
| data-storage | Data storage | string |
| document-format | Document format | string Available values are:
|
| url-out | Output file | string |
| url-suffix | Output file suffix | string |
| write-mode | Existing file | numeric Available values are:
|
Input/Output Ports
The element has 1 input port:
Name in GUI: Multiple sequence alignment
Name in Workflow File: in-msa
Slots:
| Slot In GUI | Slot in Workflow File | Type |
|---|---|---|
| MSA | msa | msa |
| Location | url | string |