Translates a sequence into it’s amino translation or translations.
Parameters in GUI
| Parameter | Description | Default value |
|---|---|---|
| Translate from | Specifies position that should be used to translate the sequence from: first, second, third or all (three output amino sequences would be generated). | all |
| Auto selected genetic code | Specifies that genetic code should be selected automatically. | True |
| Genetic code | Genetic code that should be used to translate the input nucleotide sequence. | The Standard Genetic Code |
Parameters in Workflow File
Type: sequence-translation
| Parameter | Parameter in the GUI | Type |
|---|---|---|
| pos-2-translate | Translate from | string Available values are:
|
| auto-translation | Auto selected genetic code | boolean |
| genetic-code | Genetic code | string |
Input/Output Ports
The element has 1 input port:
Name in GUI: Input Data
Name in Workflow File: in-sequence
Slots:
| Slot In GUI | Slot in Workflow File | Type |
|---|---|---|
| Sequence | sequence | sequence |
And 1 output port:
Name in GUI: Amino sequence
Name in Workflow File: out-sequence
Slots:
| Slot In GUI | Slot in Workflow File | Type |
|---|---|---|
| Sequence | sequence | sequence |
| Plain text | text | string |