Intersects two sets of annotations denoted as A and B.
Parameters in GUI
| Parameter | Description | Default value |
|---|---|---|
| Result annotations | Select one of the following:
| Overlapped annotations from set A |
| Unique overlaps | If the parameter value is "True", write original A entry once if any overlaps found in B. In other words, just report the fact at least one overlap was found in B. The minimum overlap number is ignored in this case. If the parameter value is "False", the A annotation is reported for every overlap found. | True |
| Minimum overlap | Minimum overlap required as a fraction of an annotation from set A. By default, even 1 bp overlap between annotations from set A and set B is taken into account. Yet sometimes you may want to restrict reported overlaps to cases where the annotations in B overlaps at least X% (e.g. 50%) of the A annotation. This parameter is only available if the parameter "Unique overlaps" is "False". | 0.0000001% |
Parameters in Workflow File
Type: intersect-annotations
| Parameter | Parameter in the GUI | Type |
|---|---|---|
| report | Result annotations | numeric |
| unique | Unique overlaps | boolean |
| minimum-overlap | Minimum overlap | numeric |
The element has 2 input ports:
Name in GUI: Annotations A
Name in Workflow File: input-annotations-a
Slots:
| Slot In GUI | Slot in Workflow File | Type |
|---|---|---|
| Annotations A | annotations | annotation-table |
Name in GUI: Annotations B
Name in Workflow File: input-annotations-b
Slots:
| Slot In GUI | Slot in Workflow File | Type |
|---|---|---|
| Annotations B | annotations | annotation-table |
And 1 output port:
Name in GUI: Annotations
Name in Workflow File: output-intersect-annotations
Slots:
| Slot In GUI | Slot in Workflow File | Type |
|---|---|---|
| Annotations | annotations | annotation-table |