Writes all supplied annotations to file(s) in the selected format.
Parameters in GUI
| Parameter | Description | Default value |
|---|---|---|
| Output file | Location of the output data file. If this attribute is set, slot “Location” in port will not be used. | |
| Existing file | If a target file already exists, you can specify how it should be handled: either overwritten, renamed or appended (if supported by file format). | Rename |
| Document format | Document format of output file. | genbank |
| Annotations name | Object name of the annotations. | unknown feature |
| CSV separator | String which separates values in CSV file(s). | ”,” (comma) |
| Write sequence name | Write sequence to CSV file(s). | False |
Parameters in Workflow File
Type: write-annotations
| Parameter | Parameter in the GUI | Type |
|---|---|---|
| url-out | Output file | string |
| write-mode | Existing file | numeric Available values are:
|
| document-format | Document format | string Available values are:
|
| annotations-name | Annotations name | string |
| separator | CSV separator | string |
| write_names | Write sequence name | boolean |
Input/Output Ports
The element has 1 input port:
Name in GUI: Input annotations
Name in Workflow File: in-annotations
Slots:
| Slot In GUI | Slot in Workflow File | Type |
|---|---|---|
| Set of annotations | annotations | annotation-table-list |
| Sequence | sequence | sequence |
| Source URL | url | string |