Extract the consensus sequence from the incoming multiple sequence alignment.
Parameters in GUI
Parameter | Description | Default value |
---|---|---|
Algorithm | The algorithm of consensus extracting. | |
Threshold | The threshold of the algorithm. | 100 |
Keep gaps | Set this parameter if the result consensus must keep the gaps. | True |
Parameters in Workflow File
Type: extract-msa-consensus-sequence
Parameter | Parameter in the GUI | Type |
---|---|---|
algorithm | Algorithm | string |
threshold | Threshold | numeric |
keep-gaps | Keep gaps | boolean |
Input/Output Ports
The element has 1 input port:
Name in GUI: in-msa
Name in Workflow File: in-msa
Slots:
Slot In GUI | Slot in Workflow File | Type |
---|---|---|
MSA | msa | msa |
And 1 output port:
Name in GUI: out-sequence
Name in Workflow File: out-sequence
Slots:
Slot In GUI | Slot in Workflow File | Type |
---|---|---|
Sequence | sequence | seq |