Parses annotations to find any IDs and fetches corresponding sequences.
Element type: fetch-sequence
Parameters
Parameter | Description | Default value | Parameter in Workflow File | Type |
---|---|---|---|---|
Save file to directory | The directory to store sequence files loaded from a database. | default | save-dir | string |
NCBI database | The database to read from. | nucleotide Available values are:
| database | string |
Input/Output Ports
The element has 1 input port:
Name in GUI: Input annotations
Name in Workflow File: in-annotations
Slots:
Slot In GUI | Slot in Workflow File | Type |
---|---|---|
Set of annotations | annotations | annotation-table |
And 1 output port:
Name in GUI: Sequence
Name in Workflow File: out-sequence
Slots:
Slot In GUI | Slot in Workflow File | Type |
---|---|---|
Set of annotations | annotations | annotation-table |
Sequence | sequence | sequence |