Identification of transcription factor binding sites in the DNA which have been modified by polymorphic mutation.
Parameters in GUI
| Parameter | Description | Default value |
|---|---|---|
| Database path | Path to SNPToolbox database with sequences, features and damage effect data. | |
| First site state | First sequence TFBS state. | Normal (1.0) |
| Second site state | Second sequence TFBS state. | Weakened (0.5) |
| SNP significance | Significance value for the SNP. | 0.00025 |
Parameters in Workflow File
Type: rSnp-tools
| Parameter | Parameter in the GUI | Type |
|---|---|---|
| db_path | Database path | string |
| first_site_state | First site state | numeric |
| second_site_state | Second site state | numeric |
| snp_significance | SNP significance | numeric |
Input/Output Ports
The element has 1 input port:
Name in GUI: Input variations
Name in Workflow File: in-variations
Slots:
| Slot In GUI | Slot in Workflow File | Type |
|---|---|---|
| Variation track | variation-track | variation |
And 1 output port:
Name in GUI: Output variations
Name in Workflow File: out-variations