Page tree
Skip to end of metadata
Go to start of metadata

Aligns multiple sequence alignments (MSAs) supplied with ClustalO.

Element type: ClustalO

Parameters

ParameterDescriptionDefault valueParameter in Workflow FileType
Number of iterationsNumber of (combined guide-tree/HMM) iterations.1num-iterationsnumeric
Number of guidetree iterationsMaximum number guidetree iterations.0max-guidetree-iterationsnumeric
Number of HMM iterationsMaximum number of HMM iterations.0max-hmm-iterationsnumeric
Set auto optionsSet options automatically (might overwrite some of your options).Falseset-autoboolean
Tool path

Path to the ClustalO tool.

The default path can be set in the UGENE application settings.

Defaultpathstring
Temporary directoryDirectory to store temporary files.Defaulttemp-dirstring

Input/Output Ports

The element has 1 input port:

Name in GUI: Input MSA

Name in Workflow File: in-msa

Slots:

Slot In GUISlot in Workflow FileType
MSAmsamalignment

And 1 output port:

Name in GUI: ClustalO result MSA

Name in Workflow File: out-msa

Slots:

Slot In GUISlot in Workflow FileType
MSAmsamalignment
  • No labels