Intersects two sets of annotations denoted as A and B.
Parameters in GUI
| Parameter | Description | Default value |
|---|---|---|
| Result annotations | Select one of the following:
| Overlapped annotations from set A |
| Minimum overlap | Minimum overlap required as a fraction of an annotation from set A. By default, even 1 bp overlap between annotations from set A and set B is taken into account. Yet sometimes you may want to restrict reported overlaps to cases where the annotations in B overlaps at least X% (e.g. 50%) of the A annotation. | 0.0000001% |
Parameters in Workflow File
Type: intersect-annotations
| Parameter | Parameter in the GUI | Type |
|---|---|---|
| report | Result annotations | numeric |
| minimum-overlap | Minimum overlap | numeric |
The element has 2 input ports:
Name in GUI: Annotations A
Name in Workflow File: input-annotations-a
Slots:
| Slot In GUI | Slot in Workflow File | Type |
|---|---|---|
| Annotations A | annotations | annotation-table |
Name in GUI: Annotations B
Name in Workflow File: input-annotations-b
Slots:
| Slot In GUI | Slot in Workflow File | Type |
|---|---|---|
| Annotations B | annotations | annotation-table |
And 1 output port:
Name in GUI: Annotations
Name in Workflow File: output-intersect-annotations
Slots:
| Slot In GUI | Slot in Workflow File | Type |
|---|---|---|
| Annotations | annotations | annotation-table |