Based on the input taxonomy classification data the element generates a detailed report and saves it in a tab-delimited text format.
Element type: classification-report
Parameters
Parameter | Description | Defaultvalue | Parameter in Workflow File | Type |
---|---|---|---|---|
Output file | Specify the output text file name. | output-url | string | |
All taxa | By default, taxa with no sequences (reads or contigs) assigned are not included into the output. This option specifies to include all taxa. | False | all-taxa | bool |
Sort by | It is possible to sort rows in the output file in two ways:
The second option may be useful when an output from different samples is compared. | Tax ID | sort-by | string |
Input/Output Ports
The element has 1 input port:
Name in GUI: Input taxonomy data
Name in Workflow File: in
Slots:
SlotInGUI | Slot in Workflow File | Type |
---|---|---|
Taxonomy classification data | tax-data | tax-classification |