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Aligns multiple sequence alignments (MSAs) supplied with ClustalO.

Element type: ClustalO


ParameterDescriptionDefault valueParameter in Workflow FileType
Number of iterationsNumber of (combined guide-tree/HMM) iterations.1num-iterationsnumeric
Number of guidetree iterationsMaximum number guidetree iterations.0max-guidetree-iterationsnumeric
Number of HMM iterationsMaximum number of HMM iterations.0max-hmm-iterationsnumeric
Set auto optionsSet options automatically (might overwrite some of your options).Falseset-autoboolean
Tool path

Path to the ClustalO tool.

The default path can be set in the UGENE application settings.

Temporary directoryDirectory to store temporary files.Defaulttemp-dirstring

Input/Output Ports

The element has 1 input port:

Name in GUI: Input MSA

Name in Workflow File: in-msa


Slot In GUISlot in Workflow FileType

And 1 output port:

Name in GUI: ClustalO result MSA

Name in Workflow File: out-msa


Slot In GUISlot in Workflow FileType
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