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Finds groups of specified annotations in each supplied set of annotations, stores found regions as annotations.

Element type: collocated-annotation-search


ParameterDescriptionDefault valueParameter in Workflow FileType
Result typeCopy original annotations or annotate found regions with new ones.Create new annotationsresult-typestring
Result annotation (required)Name of the result annotation to mark found collocations.misc_featureresult-namestring
Include boundariesInclude most left and most right boundary annotations regions into result or exclude them.Trueannotationsstring
Group of annotations (required)List of annotation names to search. Found regions will contain all the named annotations.
Region sizeEffectively this is the maximum allowed distance between the interesting annotations in a group.1000region-sizenumeric
Must fit into regionSpecifies whether the interesting annotations should entirely fit into the specified region to form a group.Falsemust-fitboolean

Input/Output Ports

The element has 1 input port:

Name in GUI: Input data

Name in Workflow File: in-sequence


Slot In GUISlot in Workflow FileType
Set of annotationsannotationsannotation-table-list

And 1 output port:

Name in GUI: Group annotations

Name in Workflow File: out-annotations


Slot In GUISlot in Workflow FileType
Set of annotationsannotationsannotation-table
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