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Converts the input text to a sequence.

Element type: convert-text-to-sequence


ParameterDescriptionDefault valueParameter in Workflow FileType
Sequence name (required)Result sequence name.Sequencesequence-namestring
Sequence alphabet

Alphabet of the sequence. Chooose Auto to auto-detect the alphabet or one of the following values:

  • All symbols
  • Extended DNA
  • Extended RNA
  • Standard DNA
  • Standard RNA
  • Standard amino
Skip unknown symbolsIf True, ignores all symbols that are not presented in the sequence alphabet selected.Trueskip-unknownboolean
Replace unknown symbols withReplaces all unknown symbols with the specified symbol.Nreplace-unknown-with


(1 character)

Input/Output Ports

The element has 1 input port:

Name in GUI: Input text

Name in Workflow File: in-text


Slot In GUISlot in Workflow FileType
Plain texttextstring

And 1 output port:

Name in GUI: Output sequence

Name in Workflow File: out-sequence


Slot In GUISlot in Workflow FileType
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