Extract transcript sequences from the genomic sequence(s) with gffread.
Element type: gffread
Parameters
| Parameter | Description | Default value | Parameter in Workflow File | Type |
|---|---|---|---|---|
| Output sequences | The url to the output file with the extracted sequences. | url-out | string |
Input/Output Ports
The element has 1 input port:
Name in GUI: Input transcripts
Name in Workflow File: in-data
Slots:
| Slot In GUI | Slot in Workflow File | Type |
|---|---|---|
| Genomic sequence url | genome | string |
| Transcripts url | transcripts | string |
And 1 output port:
Name in GUI: Extracted sequences url
Name in Workflow File: extracted-data
Slots:
| Slot In GUI | Slot in Workflow File | Type |
|---|---|---|
| sequences | sequences | string |