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Searches each input sequence for significantly similar sequence matches to all specified HMM profiles. In case several profiles were supplied, searches with all profiles one by one and output united set of annotations for each sequence

Element type: hmm2-search


ParameterDescriptionDefault valueParameter in Workflow FileType
Result annotationName of the result annotations.hmm_signalresult-namestring
Filter by high E-valueE-value filtering can be used to exclude low-probability hits from result.1e-1e-valnumeric
Number of seqsCalculates the E-value scores as if we had seen a sequence database of sequences.1seqs-numnumeric
Filter by low scoreScore based filtering is an alternative to E-value filtering to exclude low-probability hits from result.-1000000000.0scorenumeric

Input/Output Ports

The element has 2 input port. The first gets the input sequence:

Name in GUI: Input sequence

Name in Workflow File: in-sequence


Slot In GUISlot in Workflow FileType

The second input port gets the HMM profile:

Name in GUI: HMM profile

Name in Workflow File: in-hmm2


Slot In GUISlot in Workflow FileType
HMM profilehmm2-profilehmm2-profile

And 1 output port:

Name in GUI: HMM annotations

Name in Workflow File: out-annotations


Slot In GUISlot in Workflow FileType
Set of annotationsannotationsannotation-table
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