Page tree
Skip to end of metadata
Go to start of metadata

Builds a HMM3 profile from a multiple sequence alignment. The HMM3 profile is a statistical model which captures position-specific information about how conserved each column of the alignment is, and which residues are likely.

Element type: hmm3-build


ParameterDescriptionDefault valueParameter in Workflow FileType
Random seedRandom generator seed. 0 - means that one-time arbitrary seed will be used.0seednumeric

Input/Output Ports

The element has 1 input port:

Name in GUI: Input MSA

Name in Workflow File: in-msa


Slot In GUISlot in Workflow FileType

And 1 output port:

Name in GUI: HMM3 profile

Name in Workflow File: out-hmm3


Slot In GUISlot in Workflow FileType
HMM profilehmm3-profilehmm3-profile
  • No labels