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The element gets the message(s) with annotations data and saves the data to the specified file(s) in one of the appropriate formats (GenBank, GTF, etc.).

Element type: write-annotations


ParameterDescriptionDefault valueParameter in Workflow FileType
Data storagePlace to store workflow results: local file system or a database.
Output fileLocation of the output data file. If this attribute is set, slot “Location” in port will not be used.
Output file suffixThis suffix will be used for generating the output file name.
Existing fileIf a target file already exists, you can specify how it should be handled: either overwritten, renamed, or appended (if supported by file format).Renamewrite-mode


Available values are:

  • 0 - for overwrite
  • 1 - for append
  • 2 - for rename
Document formatDocument format of the output file.genbankdocument-format


Available values are:

  • CSV
  • GenBank
  • GFF
Merge annotations table

If true all annotation tables from the dataset will be merged into one. The value of the Annotation table name parameter will be used as the name of the result annotation table.


Input/Output Ports

The element has 1 input port:

Name in GUI: Input annotations

Name in Workflow File: in-annotations


Slot In GUISlot in Workflow FileType
Set of annotationsannotationsannotation-table-list
Source URLurlstring
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