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The element gets message(s) with sequence data and, optionally, associated annotations data and saves the data to the specified file(s) in one of the appropriate formats (GenBank, FASTA, etc.).

Element type: write-sequence


ParameterDescriptionDefault valueParameter in Workflow FileType
Data storagePlace to store workflow results: local file system or a database.
Output fileLocation of the output data file. If this attribute is set, then the “Location” slot is not taken into account.
Output file suffixThis suffix will be used for generating the output file name.
Existing fileIf a target file already exists, you can specify how it should be handled: either overwritten, renamed or appended (if supported by file format).Renamewrite-mode


Available values are:

  • 0 - for overwrite
  • 1 - for append
  • 2 - for rename
Document formatFormat of the output file.fastadocument-format


Available values are:

  • fasta
  • fastq
  • genbank
  • raw
Accumulate objectsAccumulates all incoming data in one file or creates separate files for each input. In the latter case, an incremental numerical suffix is added to a file name.Trueaccumulateboolean
Split sequenceSplit each incoming sequence on several parts.1splitnumeric

Input/Output Ports

The element has 1 input port:

Name in GUI: Sequence

Name in Workflow File: in-sequence


Slot In GUISlot in Workflow FileType
Set of annotationsannotationsannotation-table-list
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